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Tuesday Jan 17, 2012

130 million births in South Asia and sub-Saharan Africa will be unattended by a skilled birth attendant between 2011-2015.

Reduction in maternal morbidity is the fifth of the UN Millennium Development Goals. To achieve this, the aim is to have 90% of births in low and middle income countries attended by a skilled birth attendant (SBA). Whilst difficult to definitively prove, it is estimated that the attendance of a SBA could prevent between 16-33% of maternal deaths.

This study, published in BMC Pregnancy and Childbirth, estimates the numbers of non-SBA births that will occur between 2011-2015. The information is intended to inform policy makers and to assist them in the instigation of measures, which look to decrease the risks posed to mothers giving birth in the absence of a SBA.

The calculations are based on current SBA attendance and a prediction of the increase in rural and urban populations. Several varyingly optimistic scenarios were considered, based on the success of the Development Goal. Unfortunately, the conservative estimation of the number of non-SBA births in South Asia and sub-Saharan Africa between 2011-2015 was between 130 and 180 million.

Whilst significant efforts are being undertaken to provide SBA attendance at more births, it is apparent that this target will not be met. Additional measures must be taken to ensure the safety of mothers in births that are unattended.


 

Monday Jan 09, 2012

Infants' failure to regain birth weight in Africa

It is one of the Millennium Development Goals that, by 2015, the under-five morbidity rate should be reduced by a third. Whilst significant amounts of work are ongoing to achieve this target, there are still almost 4 million deaths worldwide within the first month of life.

Healthy newborns tend to lose approximately 8-15% of birth weight in the first 7 days of life, but regain this weight within 21 days postpartum. A study, in BMC Pregnancy and Childbirth, investigates this phenomena in low birth weight (LBW) infants in Uganda. Unfortunately, it was found that 48% of LBW infants had not regained their birth weight within the 21-day period. The length of hopitalisation and the provision of the first feed postpartum were both associated with this inability to regain birth weight.

Findings such as this, and the estimation that LBW infants are 13 times more likely to die than normal birth weight infants along with the fact that almost 96% of LBW infants being born in developing countries, indicate a serious hurdle to achieving the Millennium Development Goals.


 

Wednesday Dec 21, 2011

Endangered snow leopard population lower than previously thought, suggests the first wildlife genetics study to come out of Nepal

Relatively little is known about the status and population of the snow leopard (Panthera uncia); it is believed that there may be somewhere between 350 and 500 distributed across Nepal's northern frontier. This lack of knowledge is due to the snow leopard's secretive behaviour, its inaccessible habitat, and the sparse distribution of its population. Although information regarding its population distribution is limited, it is believed, sadly, that its numbers are dwindling.

A study published recently in BMC Research Notes is the first wildlife genetics research to come out of Nepal, and is a collaborative effort between (amongst others) the World Wildlife Fund and the Nepalese Center for Molecular Dynamics. It seeks ultimately to work towards facilitating the conservation of the snow leopard by using genetic analysis to demonstrate that the snow leopard’s population is actually much smaller than previously thought, whilst establishing a more realistic estimate of the status of this fascinating animal.

By utilising alternative non-invasive methods involving the analysis of scat samples collected from two sites in Nepal, it was possible to acquire more accurate statistics regarding the endangered animal's distribution. They found that only 19 of the original 71 samples were actually P. Uncia; of these 19 samples only, 10 were successfully genotyped. These were found to come from nine individual snow leopards; three males and six females.

Lead author Dibesh Karmacharya commented, "This method has the advantage over traditional methods - it is non-invasive and does not require us to disturb the cats in any way. We have also been able to show that traditional methods of counting snow leopards overestimate the size of the population."

The hope is that further research into this endangered animal will follow, resulting in a deeper understanding of its behaviour, thereby facilitating its conservation. Mr. Karmacharya went on to say “With more (and fresher) samples we will be able to investigate the family relationships, genetic diversity, social structure and territories of snow leopards, and better understand how to conserve this endangered animal."


 

Monday Dec 05, 2011

The Global Open Access Portal: A snapshot of open access progress worldwide

The Global Open Access Portal (GOAP), recently launched by UNESCO, offers a current snapshot of the status of open access to scientific information around the world. It is designed to provide the necessary information for policy-makers to learn about the global open access environment and to view their country’s status to understand where and why open access has been most successful. For scientists and medical researchers in low income countries, restricted access to research can be a major impediment to their work, and can mean the difference between life and death. Enabling researchers to access and publish their work without  barriers is a major step towards helping scientists in developing countries to tackle the problems outlined in the millennium development goals, of hunger, health and poverty. The open access movement is now attracting the global recognition it deserves and many organizations are working together to find ways to make open access a reality across the globe. Open Access Africa, for example, is a collection of initiatives, led by BioMed Central, which are designed to increase the output and visibility of scientific research published by African research institutes. The initiatives include a commitment to allow researchers from low income countries to publish their research in open access journals without incurring any charges, a Membership scheme for institutions in those countries to help members to promote open access within their institutions, and an annual Open Access Africa conference. However, our initiative is only one of numerous initiatives run by various organizations globally.

In order to alert interested parties to these schemes and to help make open access a reality, excellent up-to-date information is needed. GOAP has now joined initiatives such as the OSI-supported Open Access Scholarly Information Sourcebook (OASIS), led by foremost open access experts Dr Alma Swan and Professor Leslie Chan, and Peter Suber’s authoritative monthly report on the status of OA. It offers researchers a complete overview of the services and support available to them both locally and internationally. The portal will allow researchers to develop and sustain their open access policies, which will improve access to research and lead to more effective research. Detailed, region-specific information will offer inspiration and help to researchers and institutions to set up an open access journal, an institutional repository or an open access advocacy campaign, and will act as a reference source to show how others went about their open access developments and with which possible partnerships. The more we can encourage open access to research the quicker scientific, social and economic development can progress.


 

Thursday Dec 01, 2011

Advancing diagnosis of HIV-infected infants

HIV is known as one of the world's leading infectious killers, and remains one of the most challenging global epidemics. This week WHO has released its Report on the global HIV/AIDS response, it is the fifth annual report from WHO, UNICEF and UNAIDS, amongst other collaborators, which provides an update of the HIV epidemic and health sector progress in 2010. Flickr cc- geezaweezer

The report reflects on the key areas highlighted for development, which include updates to health sector interventions for HIV prevention; improving treatment and care for people living with HIV, increasing knowledge around HIV, increasing availability of HIV services for women and children and current progress on elimination of mother to child transmission by 2015.

Although the aim of eliminating mother to child transmission by 2015 is an ambitious goal to achieve, several African countries including South Africa have already made significant progress by providing antiretrovirals to 80% of infected pregnant women.

HIV-infected infants have a high mortality rate, and although recent recommendations by WHO are to treat HIV infected infants as soon their HIV status is known, diagnostic testing commonly occurs when the infant is approximately 6 weeks old. Whilst the recent report demonstrates there have been improvements in many areas,  of 65 reporting countries, approximately only  28% of infants born to mothers living with HIV received an HIV test within the first two months of life.


An article recently published in BMC Pediatrics initiates the development of a clinical algorithm for presumptive HIV diagnosis in infants less than 10 weeks old, using screening data such as weight-for-age, more lymphadenopathy (disease of lympnodes), oral thrush, enlarged spleen, enlarged liver, and anaemia for example. Applications of this algorithm would mean that infants with a high probability of HIV infection can be fast-tracked for early diagnosis and treatment, essential in areas with limited resources and where there is increased exposure to HIV.

Earlier this month marked the annual United Nations Universal Children's Day held on 20th November. The aims of this global day directly impact the efforts of the WHO collaborative Global HIV/AIDS response group, and researchers worldwide advancing HIV science.


 

Tuesday Nov 29, 2011

Open Access Africa 2011: A brief report

Guest blog by Pablo de Castro, GrandIR, speaker at Open Access Africa 2011

The first Open Access Africa conference, which was held in November 2010 at Jomo Kenyatta University in Nairobi, was originally planned to be a one-time event. However, the enthusiasm and insistent calls by conference attendees to hold further Open Access Africa conference editions resulted in the second Open Access Africa being scheduled from October 25-26 2011 at the Kwame Nkrumah University of Science and Technology (KNUST) in Kumasi, Ghana. The conference, organized by BioMed Central, aimed to bring together researchers, librarians and funding bodies from within and outside of Africa to discuss the benefits of open access publishing in an African context.

The number of attendees at Open Access Africa events keeps increasing; at this year’s event more than 150 representatives from various African countries including Ghana, Nigeria, Kenya, Ethiopia and Sudan were in attendance at KNUST to  listen to the talks on different open access-related subjects.

A large number of presentations regarding open access projects and initiatives being presently carried out in Africa were held at the recent event, such as the UN Economic Commission for Africa (ECA) Institutional Repository, launched last May in Addis Ababa (presented by Irene Onyancha, UNECA Chief Librarian), promotion of open access availability of case reports (by Joseph Ana, British Medical Journal West Africa), KNUST open access Institutional Repository (Helena Assamoah-Hassan, KNUST Library) and the OASCIR Project for setting up the first Sudanese Institutional Repository (Pablo de Castro, GrandIR). However, the Open Access Africa 2011 talks had a somewhat wider scope, with presentations such as those by Google Ghana or mPedigree, a successful Ghanaian startup for fighting drug counterfeiting in Africa, going beyond open access into specific technological application initiatives; arising a remarkable interest along the round table held right after the talks.

On day one at the event, Deborah Kahn, Publishing Director at BioMed Central, had offered an overview of open access in developing countries. She showed how connectivity is gradually improving in Africa and how that gives way to other issues such as access to computers and computer skills, research funding, research literature, skills to write research papers and  where to publish research works. The Open Access Africa 2011 conference was a very good opportunity for discussing all these issues, with Mathew Harvey from Department for International Development (DFID) providing the funders' viewpoint, Edanz introducing support programmes for English language research paper editing and Gladys Muhunyo, Director of Computer Aid Kenya, describing their intensive work for supplying low-cost technology to partners in many African countries.

There was also a lively interest from local media to reflect the scientific event being held at KNUST, and interviews with Carrie Calder, BioMed Central Head of Marketing and Digital Sales, were performed as a result at Focus FM and by a local TV station.

There was also an Open Access Africa 2011 poster section, in which initiatives such as EU FP7 Africa Build Project, aiming to build a research and educational infrastructure for Africa, or the Nigerian experience at developing Open Access, by Oluwatoyosi Owoeye from the College of Medicine at University of Lagos, were featured.

Finally, the EIFL-funded OASCIR Project for setting up the first Institutional Repository in Sudan attracted much attention due to the fact that it was a direct result from the Open Access Africa 2010 conference. Dr. Rania M. H. Baleela, Assistant Professor at the Department of Zoology, Faculty of Sciences, University of Khartoum and myself, then a member of the e-archivo Institutional Repository team at Carlos III University Madrid, first met at Open Access Africa 2010 and had extensive discussions on how to foster open access initiatives and Institutional Repositories in African countries. An agreement for future cooperation came out of those talks, as a result of which GrandIR startup was founded in Madrid in December 2010, so that when the EIFL funding call arrived in February 2011 for supporting open access advocacy campaigns in developing countries, they were able to quickly put together and submit a proposal (the OASCIR Project) for setting up the Open Access SCientific Institutional Repository at the Faculty of Science U of K. Both Rania and I are very proud of our achievements and want to thank BioMed Central for the invitation to be able to present the project at the Open Access Africa 2011 conference, such a successful platform for promoting open access in countries like Sudan where no Institutional Repository existed before. The OASCIR project was well under way exactly one year after the project was born as a concept. It would be very good news if other successful cooperation projects among different institutions in and outside Africa were born from the Open Access Africa 2011 conference in Kumasi this year and could be presented as success stories next year at Open Access Africa 2012.


 

Friday Nov 25, 2011

Views of an Open Access Africa 2011 delegate: Open access and the unlimited benefits

Guest article by Dr. Tobias Innocent Ndubuisi Ezejiofor, Federal University of Technology, Owerri, Nigeria. 

The benefits of open access are unlimited. As a medical and environmental scientist involved in biological and environmental monitoring and always needing to analyze human and environmental specimens, three major factors are critical to me: background information on the theme of interest, analytical technique and equipment to carry through the desired analyses and less cumbersome publication processes that would also guarantee visibility of my work.

In all these, Western scientists and researchers have always had the upper hand because of the leaner resource base of people in Africa and the developing world. Information is power yet access to information is restricted because of the need to subscribe to sources, especially journals, and in most cases this has to be done in, often stronger, foreign currencies. A major consequence of this is inhibition to information flow. It is in this connection that open access has done a lot in creating a level playing ground to all scientists and researchers in terms of access to available information. Through open access, my research efforts have been greatly enhanced and my work made more visible, as attested to by sundry requests from across the world. For us in Africa, open access means liberation from information inhibitions and from research/publication visibility clouds. Indeed the trappings/benefits of open access can hardly be over estimated that I am sufficiently led to say that I see a great future for quality research and publication outputs for and from African Scientists and professionals through the open access initiative.


 

Friday Nov 11, 2011

Open Access Africa 2011: Speaker presentations, images and poster abstracts available online

Open Access Africa 2011, a BioMed Central and Computer Aid International event, was hosted at Kwame Nkrumah University of Science and Technology (KNUST), Kumasi, Ghana, during Open Access Week 2011.

All presentations, delivered by representatives from Google, British Medical Journal (BMJ), Department for International Development (DFID), Pan African Medical Journal and the United Nations Economic Commission for Africa (UNECA), are now available online, together with conference images and poster abstracts. Videos of all presentations will follow shortly.

The conference, now in its second year, discussed open access publishing in an African context and the diverse programme offered insights from library, funding and technology perspectives as part of Open Access Africa, a collection of initiatives designed to increase the output and visibility of scientific research published by African learning institutes.

The birth of Sudan’s first Institutional Repository, created by the University of Khartoum, was a direct result of a meeting held last year at Open Access Africa 2010. What further developments will be sparked by this year’s event?

Dr. Tobias I. Ndubuisi Ezejiofor, one of the attending delegates, commented, ‘For us in Africa, open access means liberation from information inhibitions and from research/publication visibility clouds. Indeed the trappings and benefits of open access can hardly be over estimated that I am sufficiently led to say: “I see a great future for quality research and publication outputs for and from African scientists and professionals through the open access initiative.”’

Advocate. Share the presentation link. And help ensure a great future for African science.


 

Monday Nov 07, 2011

The Blossoming of Open Access in Africa

Last week, I returned from Ghana, where BioMed Central and ComputerAid  were running the 2nd annual  Open Access Africa conference. The conference was hosted by Kwame Nkrumah University of Science and Technology (KNUST) and ran like clockwork due to the outstanding efforts of the University Librarian, Helena Asamoah-Hassan, and her team. Mrs Asamoah-Hassan is a leader in open access developments in Africa ; KNUST implemented the first Institutional Repository in Ghana, was the first Foundation Member of BioMed Central,  and the Vice Chancellor is in the process of signing the  Berlin Declaration. On these merits it was a really appropriate venue to hold the conference.

I have been to a lot of open access talks over the last years, and these days rarely hear much that makes me sit up and listen. This conference was different. Here were a group of exceptionally motivated people, doing extraordinary things with few resources and showing how open access really can change lives. It was inspiring. It also raised some questions to consider.

The need for African based open access journals, and the issues with funding them, was a theme throughout the conference. African journals publish research which is relevant to Africa and needs to be accessible to other African researchers. Lesley Chan  from Bioline used the example of Professor Mary Abukutsa-Onyango’s  research into African indigenous vegetables, as an example of why  important research relevant to the continent needs to be published in open access journals, which can be read and the results applied in Africa.

There is much support for African journals to be published under an open access model, but this does raise the question of sustainability.  Many open access publishers, such as BioMed Central, waive the Article Processing Charge (APC) automatically for researchers in low-income countries. However, as open access gains momentum in these countries, this may not remain a sustainable option, so it was interesting to hear the Vice Dean of the Medical School at KNUST, Yaw Adu-Sarkodie,  saying that  he would always pay the APC when his work has the funding to do so even if he was offered a waiver, enabling others who did not have funding  to get published.

Another aspect of this was raised by Raoul Kamadjeu who founded and runs the Pan African Medical Journal , an open access journal. Only a couple of years old, it is an outstanding  success, having received over 800 submissions this year alone. However with this success,  it needs urgently to consider how it will fund itself in the future. He asks “with the international publishers granting waivers to African authors, how can I persuade them to pay an APC?”.  

A conversation needs to continue on these issues.

Institutional Repositories are playing a big part in making African research open and in raising the visibility of the research in many universities, and we were presented with interesting views of experiences of building repositories from Helena Asamoah-Hassan of  KNUST and from Irene Ochyancha from the United Nations Economic Commission for Africa (UNECA). It was especially exciting for us to hear from Pablo de Castro that the new Institutional Repository built at the University of Khartoum was a direct result of a meeting held at the first Open Access Africa conference.

At this conference, many more relationships were forged and ideas hatched. New open access groups were formed at the conference for Nigeria and Ghana. We look forward to hearing next year at Open Access Africa 2012 about the blossoming of open access in Africa, and the new developments which will doubtless have been born at this conference.

 


 

Wednesday Nov 02, 2011

Tunisia: Plant extracts from Nitraria retusa induce apoptosis in human cancer cells

Plant extracts have long been used in traditional medicines to treat a variety of ailments and diseases.  One such plant is Nitraria retusa, a salt-tolerant bush native to the deserts of Northern Africa.  Its ashes have the ability to remove fluids from infected wounds and, in Morocco, the leaves are used to treat cases of poisoning, upset stomach, ulcers, gastritis, enteritis, heartburn, colitis and colonic abdominal pain.  The effectiveness of these remedies was often cast into doubt and they became labelled as ‘alternative therapies’.  More recently, however, studies into plant compounds have found that they may have a role to play in the treatment of various diseases, including cancer.

The evasion of apoptosis through the blocking of cell signaling pathways has long been established as a common feature of cancer cells.  Certain plant extracts have been shown to activate apoptotic pathways and it is thought that these could play an important role in the treatment of cancer by promoting the apoptosis of cancerous cells and restricting the concurrent death of normal cells.